1YJK Oxidoreductase date Jan 14, 2005
title Reduced Peptidylglycine Alpha-Hydroxylating Monooxygenase (P New Crystal Form
authors X.Siebert, B.A.Eipper, R.E.Mains, S.T.Prigge, N.J.Blackburn, L.M.
compound source
Molecule: Peptidyl-Glycine Alpha-Amidating Monooxygenase
Chain: A
Fragment: Peptidylglycine Alpha-Hydroxylating Monooxygenase 50-355);
Synonym: Pam
Ec: 1.14.17.3
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Pam
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Dg44
Expression_system_vector_type: Virus
Expression_system_plasmid: Pcis
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.146 66.335 69.917 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CU, GOL enzyme Oxidoreductase E.C.1.14.17.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Catalytic Copper of Peptidylglycine {alpha}-Hydroxylating Monooxygenase also Plays a Critical Structural Role., Siebert X, Eipper BA, Mains RE, Prigge ST, Blackburn NJ, Amzel LM, Biophys J 2005 Nov;89(5):3312-9. Epub 2005 Aug 12. PMID:16100265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1yjk.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1YJK
  • CSU: Contacts of Structural Units for 1YJK
  • Likely Quarternary Molecular Structure file(s) for 1YJK
  • Retrieve 1YJK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YJK from S2C, [Save to disk]
  • View 1YJK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YJK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YJK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yjk_A] [1yjk]
  • SWISS-PROT database: [P14925]
  • Domain organization of [AMD_RAT] by SWISSPFAM
  • Other resources with information on 1YJK
  • Community annotation for 1YJK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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