1YKR	Transferase	date	Jan 18, 2005
title	Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine Inhi
authors	C.Hamdouchi, B.Zhong, J.Mendoza, C.Jaramillo, F.Zhang, H.B.Brooks
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: P33 Protein Kinase Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk2 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_strain: Sf9 Expression_system_vector_type: Virus
symmetry	Space Group: P 21 21 21	R_factor 0.255 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.250 71.393 71.418 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	628	enzyme	Transferase E.C.2.7.1.37 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-based design of a new class of highly selective aminoimidazo[1,2-a]pyridine-based inhibitors of cyclin dependent kinases., Hamdouchi C, Zhong B, Mendoza J, Collins E, Jaramillo C, De Diego JE, Robertson D, Spencer CD, Anderson BD, Watkins SA, Zhang F, Brooks HB, Bioorg Med Chem Lett. 2005 Apr 1;15(7):1943-7. PMID:15780638

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk] Biological Unit Coordinates (1ykr.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 1YKR CSU: Contacts of Structural Units for 1YKR Likely Quarternary Molecular Structure file(s) for 1YKR Retrieve 1YKR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YKR from S2C, [Save to disk]

View 1YKR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YKR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YKR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ykr_A] [1ykr] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 1YKR: [S_TKc ] by SMART

Other resources with information on 1YKR

Community annotation for 1YKR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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