1YKW	Unknown Function	date	Jan 18, 2005
title	Crystal Structure Of A Novel Rubisco-Like Protein From The G Sulfur Bacterium Chlorobium Tepidum
authors	H.Li, M.R.Sawaya, F.R.Tabita, D.Eisenberg
compound		source
Molecule: Rubisco-Like Protein Chain: A, B Engineered: Yes Mutation: Yes		Organism_scientific: Chlorobaculum Tepidum Organism_taxid: 1097 Gene: Ct1772 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl-21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-11a
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.348 78.451 90.369 90.00 99.95 90.00
method	X-Ray Diffraction	resolution	2.00 Å
note	1YKW is a representative structure
related structures	by homologous chain: 1TEL
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum., Li H, Sawaya MR, Tabita FR, Eisenberg D, Structure. 2005 May;13(5):779-89. PMID:15893668

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk] Biological Unit Coordinates (1ykw.pdb1.gz) 133 Kb CSU: Contacts of Structural Units for 1YKW Likely Quarternary Molecular Structure file(s) for 1YKW Structure Factors (475 Kb) Retrieve 1YKW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YKW from S2C, [Save to disk] Re-refined 1ykw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YKW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YKW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YKW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ykw] [1ykw_A] [1ykw_B] SWISS-PROT database: [Q8KBL4] Domain organization of [RBLL_CHLTE] by SWISSPFAM

Other resources with information on 1YKW

Community annotation for 1YKW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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