1YL5 Oxidoreductase date Jan 19, 2005
title Crystal Structure Of Mycobacterium Tuberculosis Dihydrodipic Reductase (Rv2773c) (Crystal Form A)
authors R.Janowski, G.Kefala, M.S.Weiss, Tb Structural Genomics Consort (Tbsgc)
compound source
Molecule: Dihydrodipicolinate Reductase
Chain: A, B
Synonym: Dhpr
Ec: 1.3.1.26
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Dapb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm-11
symmetry Space Group: P 21 21 2
R_factor 0.205 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.260 122.000 77.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MG enzyme Oxidoreductase E.C.1.3.1.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of dihydrodipicolinate reductase (DapB) from Mycobacterium tuberculosis in three crystal forms., Janowski R, Kefala G, Weiss MS, Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):61-72. Epub 2009, Dec 21. PMID:20057050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1yl5.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 1YL5
  • CSU: Contacts of Structural Units for 1YL5
  • Likely Quarternary Molecular Structure file(s) for 1YL5
  • Structure Factors (183 Kb)
  • Retrieve 1YL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YL5 from S2C, [Save to disk]
  • Re-refined 1yl5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YL5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YL5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YL5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yl5] [1yl5_A] [1yl5_B]
  • SWISS-PROT database: [P72024]
  • Domain organization of [DAPB_MYCTU] by SWISSPFAM
  • Other resources with information on 1YL5
  • Community annotation for 1YL5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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