1YNU Lyase date Jan 25, 2005
title Crystal Structure Of Apple Acc Synthase In Complex With L-Vi
authors G.Capitani, M.Tschopp, A.C.Eliot, J.F.Kirsch, M.G.Grutter
compound source
Molecule: 1-Aminocyclopropane-1-Carboxylate Synthase
Chain: A
Synonym: Acc Synthase, S-Adenosyl-L-Methionine Methylthioad Lyase;
Ec: 4.4.1.14
Engineered: Yes
Organism_scientific: Malus X Domestica
Organism_taxid: 3750
Strain: Golden Delicious
Tissue: Fruit Cortical Tissue
Gene: Acs-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19bv435stopacs
symmetry Space Group: C 1 2 1
R_factor 0.234 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.300 59.360 79.050 90.00 124.20 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand K, NI, PY4, TRS enzyme Lyase E.C.4.4.1.14 BRENDA
related structures by homologous chain: 1B8G, 1M4N
Gene
Ontology
ChainFunctionProcessComponent
A
  • 1-aminocyclopropane-1-carbox...


  • Primary referenceStructure of ACC synthase inactivated by the mechanism-based inhibitor L-vinylglycine., Capitani G, Tschopp M, Eliot AC, Kirsch JF, Grutter MG, FEBS Lett. 2005 Apr 25;579(11):2458-62. PMID:15848188
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1ynu.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (1ynu.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1YNU
  • CSU: Contacts of Structural Units for 1YNU
  • Likely Quarternary Molecular Structure file(s) for 1YNU
  • Structure Factors (133 Kb)
  • Retrieve 1YNU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YNU from S2C, [Save to disk]
  • Re-refined 1ynu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YNU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YNU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YNU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ynu] [1ynu_A]
  • SWISS-PROT database: [P37821]
  • Domain organization of [1A1C_MALDO] by SWISSPFAM
  • Other resources with information on 1YNU
  • Community annotation for 1YNU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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