1YOM	Transferase	date	Jan 27, 2005
title	Crystal Structure Of Src Kinase Domain In Complex With Purva
authors	C.B.Breitenlechner, N.A.Kairies, K.Honold, S.Scheiblich, H.Koll, E.Greiter, S.Koch, W.Schaefer, R.Huber, R.A.Engh
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src Chain: A, B Fragment: Src Kinase Domain Synonym: P60-Src, C-Src Ec: 2.7.1.112 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1	R_factor 0.217 R_Free 0.313
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.698 63.078 74.055 100.61 88.86 89.89
method	X-Ray Diffraction	resolution	2.90 Å
ligand	P01 BindingDB	enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of active SRC kinase domain complexes., Breitenlechner CB, Kairies NA, Honold K, Scheiblich S, Koll H, Greiter E, Koch S, Schafer W, Huber R, Engh RA, J Mol Biol. 2005 Oct 21;353(2):222-31. PMID:16168436

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (1yom.pdb1.gz) 44 Kb Biological Unit Coordinates (1yom.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 1YOM CSU: Contacts of Structural Units for 1YOM Likely Quarternary Molecular Structure file(s) for 1YOM Retrieve 1YOM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YOM from S2C, [Save to disk]

View 1YOM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YOM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YOM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yom] [1yom_B] [1yom_A] SWISS-PROT database: [P12931] Domain organization of [SRC_HUMAN] by SWISSPFAM Domain found in 1YOM: [TyrKc ] by SMART

Other resources with information on 1YOM

Community annotation for 1YOM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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