1YOU	Hydrolase	date	Jan 28, 2005
title	Crystal Structure Of The Catalytic Domain Of Mmp-13 Complexe Potent Pyrimidinetrione Inhibitor
authors	J.Pandit
compound		source
Molecule: Collagenase 3 Chain: A, B Fragment: Mmp-13 Catalytic Domain Synonym: Matrix Metalloproteinase-13, Mmp-13 Ec: 3.4.24.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp13 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.208 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.089 108.223 36.035 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CA, PFD, SO4, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24 BRENDA
related structures	by homologous chain: 1BQO, 1JAO, 1SLN
Gene Ontology	Chain Function Process Component A, B
Primary reference	Potent pyrimidinetrione-based inhibitors of MMP-13 with enhanced selectivity over MMP-14., Blagg JA, Noe MC, Wolf-Gouveia LA, Reiter LA, Laird ER, Chang SP, Danley DE, Downs JT, Elliott NC, Eskra JD, Griffiths RJ, Hardink JR, Haugeto AI, Jones CS, Liras JL, Lopresti-Morrow LL, Mitchell PG, Pandit J, Robinson RP, Subramanyam C, Vaughn-Bowser ML, Yocum SA, Bioorg Med Chem Lett. 2005 Apr 1;15(7):1807-10. PMID:15780611

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1you.pdb1.gz) 29 Kb Biological Unit Coordinates (1you.pdb2.gz) 28 Kb Biological Unit Coordinates (1you.pdb3.gz) 109 Kb LPC: Ligand-Protein Contacts for 1YOU CSU: Contacts of Structural Units for 1YOU Likely Quarternary Molecular Structure file(s) for 1YOU Structure Factors (196 Kb) Retrieve 1YOU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YOU from S2C, [Save to disk] Re-refined 1you structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YOU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YOU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YOU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1you] [1you_B] [1you_A] SWISS-PROT database: [P45452] Domain organization of [MMP13_HUMAN] by SWISSPFAM Domain found in 1YOU: [ZnMc ] by SMART

Other resources with information on 1YOU

Community annotation for 1YOU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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