1YRC Oxidoreductase date Feb 03, 2005
title X-Ray Crystal Structure Of Hydrogenated Cytochrome P450cam
authors F.Meilleur, M.T.Dauvergne, I.Schlichting, D.A.A.Myles
compound source
Molecule: Cytochrome P450-Cam
Chain: A
Synonym: Camphor 5-Monooxygenase, P450cam
Ec: 1.14.15.1
Engineered: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
symmetry Space Group: P 43 21 2
R_factor 0.202 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.650 63.650 246.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CAM, HEM, K enzyme Oxidoreductase E.C.1.14.15.1 BRENDA
related structures by homologous chain: 1RE9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProduction and X-ray crystallographic analysis of fully deuterated cytochrome P450cam., Meilleur F, Dauvergne MT, Schlichting I, Myles DA, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):539-44. Epub 2005, Apr 20. PMID:15858263
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1yrc.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1YRC
  • CSU: Contacts of Structural Units for 1YRC
  • Likely Quarternary Molecular Structure file(s) for 1YRC
  • Structure Factors (727 Kb)
  • Retrieve 1YRC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YRC from S2C, [Save to disk]
  • Re-refined 1yrc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YRC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YRC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1YRC from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YRC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yrc] [1yrc_A]
  • SWISS-PROT database: [P00183]
  • Domain organization of [CPXA_PSEPU] by SWISSPFAM
  • Other resources with information on 1YRC
  • Community annotation for 1YRC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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