1YS1 Hydrolase date Feb 06, 2005
title Burkholderia Cepacia Lipase Complexed With Hexylphosphonic A Methyl-3-Phenylpropyl Ester
authors A.Mezzetti, J.D.Schrag, C.S.Cheong, R.J.Kazlauskas
compound source
Molecule: Lipase
Chain: X
Fragment: Residues 45-364
Synonym: Triacylglycerol Lipase
Ec: 3.1.1.3
Organism_scientific: Burkholderia Cepacia
Organism_taxid: 292
symmetry Space Group: C 1 2 1
R_factor 0.149 R_Free 0.158
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.848 46.185 84.626 90.00 121.27 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand 2HR, CA enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1YS2
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceMirror-Image Packing in Enantiomer Discrimination Molecular Basis for the Enantioselectivity of B.cepacia Lipase toward 2-Methyl-3-Phenyl-1-Propanol., Mezzetti A, Schrag JD, Cheong CS, Kazlauskas RJ, Chem Biol 2005 Apr;12(4):427-37. PMID:15850979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1ys1.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1YS1
  • CSU: Contacts of Structural Units for 1YS1
  • Likely Quarternary Molecular Structure file(s) for 1YS1
  • Structure Factors (799 Kb)
  • Retrieve 1YS1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YS1 from S2C, [Save to disk]
  • Re-refined 1ys1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YS1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YS1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YS1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ys1] [1ys1_X]
  • SWISS-PROT database: [P22088]
  • Domain organization of [LIP_BURCE] by SWISSPFAM
  • Other resources with information on 1YS1
  • Community annotation for 1YS1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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