1YSO Oxidoreductase (Superoxide Acceptor) date Dec 21, 1995
title Yeast Cu, Zn Superoxide Dismutase With The Reduced Bridge Br
authors H.E.Parge, B.R.Crane, J.Tsang, J.A.Tainer
compound source
Molecule: Yeast Cu, Zn Superoxide Dismutase
Chain: A
Synonym: Yeast Cu, Zn Sod
Ec: 1.15.1.1
Other_details: Reduced Cui Bridge Broken
 Organism_scientific: Candida Albicans
Organism_taxid: 5476
symmetry Space Group: H 3 2
R_factor 0.182 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.330 119.330 75.190 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.73 Å
ligand CU1, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1F18, 1F1A
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnusual trigonal-planar copper configuration revealed in the atomic structure of yeast copper-zinc superoxide dismutase., Ogihara NL, Parge HE, Hart PJ, Weiss MS, Goto JJ, Crane BR, Tsang J, Slater K, Roe JA, Valentine JS, Eisenberg D, Tainer JA, Biochemistry 1996 Feb 20;35(7):2316-21. PMID:8652572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1yso.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1YSO
  • CSU: Contacts of Structural Units for 1YSO
  • Likely Quarternary Molecular Structure file(s) for 1YSO
  • Retrieve 1YSO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YSO from S2C, [Save to disk]
    • View 1YSO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YSO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YSO, from MSDmotif at EBI
  • Genome occurence of 1YSO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yso__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yso_A] [1yso]
  • SWISS-PROT database: [P00445]
  • Domain organization of [SODC_YEAST] by SWISSPFAM
    • Other resources with information on 1YSO
  • Community annotation for 1YSO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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