1YT6 De Novo Protein date Feb 10, 2005
title Nmr Structure Of Peptide Sd
authors T.Murata, H.Hemmi, S.Nakamura, K.Shimizu, Y.Suzuki, I.Yamaguchi
compound source
Molecule: Peptide Sd
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: Chemically Synthesized
methodSolution NMR
Primary referenceStructure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand., Murata T, Hemmi H, Nakamura S, Shimizu K, Suzuki Y, Yamaguchi I, FEBS J. 2005 Oct;272(19):4938-48. PMID:16176267
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1yt6.pdb1.gz) 2 Kb
  • CSU: Contacts of Structural Units for 1YT6
  • Original NMR restraints for 1YT6 from PDB
  • Retrieve 1YT6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YT6 from S2C, [Save to disk]
  • View 1YT6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YT6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YT6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yt6] [1yt6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1YT6
  • Community annotation for 1YT6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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