1YUG Growth Factor date Apr 01, 1996
title Type Alpha Transforming Growth Factor, Nmr, 15 Models After Energy Minimization
authors F.J.Moy, G.T.Montelione, H.A.Scheraga
compound source
Molecule: Transforming Growth Factor Alpha
Chain: A
Synonym: Tgf-Alpha, H-Tgf-Alpha
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human Tgf-Alpha 1yug
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pte5
Expression_system_gene: Human Tgf-Alpha 1yug
methodSolution NMR
related structures by homologous chain: 1YUF, 2TGF
Primary referenceSolution structure of human type-alpha transforming growth factor determined by heteronuclear NMR spectroscopy and refined by energy minimization with restraints., Moy FJ, Li YC, Rauenbuehler P, Winkler ME, Scheraga HA, Montelione GT, Biochemistry 1993 Jul 27;32(29):7334-53. PMID:8338831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (1yug.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1YUG
  • Retrieve 1YUG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YUG from S2C, [Save to disk]
    • View 1YUG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YUG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YUG, from MSDmotif at EBI
  • Genome occurence of 1YUG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1yug__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yug_A] [1yug]
  • SWISS-PROT database: [P01135]
  • Domain organization of [TGFA_HUMAN] by SWISSPFAM
  • Domain found in 1YUG: [EGF ] by SMART
    • Other resources with information on 1YUG
  • Community annotation for 1YUG at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1YUG from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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