1YUO	Hydrolase	date	Feb 14, 2005
title	Optimisation Of The Surface Electrostatics As A Strategy For Adaptation Of Uracil-Dna N-Glycosylase (Ung)From Atlantic C Morhua)
authors	E.Moe, I.Leiros, E.K.Riise, M.Olufsen, O.Lanes, A.O.Smalas, N.P.Wi
compound		source
Molecule: Uracil-Dna Glycosylase Chain: A Fragment: Catalytic Domain Synonym: Udg Ec: 3.2.2.3 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ung Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Nr8052 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ptrc99a
symmetry	Space Group: P 21 21 21	R_factor 0.210 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.511 54.771 78.071 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand		enzyme	Hydrolase E.C.3.2.2.3 BRENDA
related structures	by homologous chain: 1EMJ, 1UGH
Gene Ontology	Chain Function Process Component A
Primary reference	Optimisation of the surface electrostatics as a strategy for cold adaptation of uracil-DNA N-glycosylase (UNG) from Atlantic cod (Gadus morhua)., Moe E, Leiros I, Riise EK, Olufsen M, Lanes O, Smalas A, Willassen NP, J Mol Biol 2004 Nov 5;343(5):1221-30. PMID:15491608

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1yuo.pdb1.gz) 38 Kb CSU: Contacts of Structural Units for 1YUO Likely Quarternary Molecular Structure file(s) for 1YUO Structure Factors (232 Kb) Retrieve 1YUO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YUO from S2C, [Save to disk] Re-refined 1yuo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YUO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YUO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YUO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yuo_A] [1yuo] SWISS-PROT database: [P13051] Domain organization of [UNG_HUMAN] by SWISSPFAM Domains found in 1YUO: [UDG] [UreE_C ] by SMART

Other resources with information on 1YUO

Community annotation for 1YUO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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