1YVH	Ligase,Signaling Protein,Immune System	date	Feb 15, 2005
title	Crystal Structure Of The C-Cbl Tkb Domain In Complex With Th Ptyr-618 Phosphopeptide
authors	J.Hu, S.R.Hubbard
compound		source
Molecule: Cbl E3 Ubiquitin Protein Ligase Chain: A Fragment: Tyrosine Kinase Binding Domain, Residues 25-351 Synonym: Signal Transduction Protein Cbl; Proto-Oncogene C- Casitas B-Lineage Lymphoma Proto- Oncogene; Ring Finger Pro Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cbl, Cbl2, Rnf55 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-1
Molecule: 13-Mer Fragment Of Sh2 And Ph Domain-Containing A Protein Aps; Chain: B Fragment: Ptyr-618 Phosphopeptide Synonym: Aps Adapter Protein Engineered: Yes		Synthetic: Yes Other_details: Sequence Appears In Rattus Norvegicus, Gene
symmetry	Space Group: P 6	R_factor 0.209 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 122.257 122.257 55.131 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	MG, PTR	enzyme	Ligase E.C.6.3.2 BRENDA
related structures	by homologous chain: 2CBL
Gene Ontology	Chain Function Process Component A
Primary reference	Structural characterization of a novel Cbl phosphotyrosine-recognition motif in the APS family of adapter proteins., Hu J, Hubbard SR, J Biol Chem 2005 Feb 28;. PMID:15737992

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (1yvh.pdb1.gz) 55 Kb LPC: Ligand-Protein Contacts for 1YVH CSU: Contacts of Structural Units for 1YVH Likely Quarternary Molecular Structure file(s) for 1YVH Structure Factors (414 Kb) Retrieve 1YVH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YVH from S2C, [Save to disk] Re-refined 1yvh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YVH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YVH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YVH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yvh] [1yvh_A] [1yvh_B] SWISS-PROT database: [P22681] [Q9Z200] Domain organization of [CBL_HUMAN] [SH2B2_RAT] by SWISSPFAM

Other resources with information on 1YVH

Community annotation for 1YVH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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