1YVI Signaling Protein date Feb 15, 2005
title X-Ray Structure Of Putative Histidine-Containing Phosphotran Protein From Rice, Ak104879
authors G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman, S.T.M.All Center For Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Histidine-Containing Phosphotransfer Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Oryza Sativa
Organism_common: Rice
Organism_taxid: 4530
Gene: Ak104879
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3) P(Laci+Rare)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvp-13
symmetry Space Group: P 43 21 2
R_factor 0.172 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.558 100.558 69.568 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1WN0
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • histidine phosphotransfer ki...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1yvi.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (1yvi.pdb2.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1YVI
  • Likely Quarternary Molecular Structure file(s) for 1YVI
  • Structure Factors (540 Kb)
  • Retrieve 1YVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YVI from S2C, [Save to disk]
  • Re-refined 1yvi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1YVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YVI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YVI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yvi_A] [1yvi] [1yvi_B]
  • SWISS-PROT database: [Q6VAK4]
  • Domain organization of [HP1_ORYSJ] by SWISSPFAM
  • Domain found in 1YVI: [HPT ] by SMART
    • Other resources with information on 1YVI
  • Community annotation for 1YVI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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