1YVP	Rna Binding Protein Rna	date	Feb 16, 2005
title	Ro Autoantigen Complexed With Rnas
authors	A.J.Stein, G.Fuchs, C.Fu, S.L.Wolin, K.M.Reinisch
compound		source
Molecule: Y Rna Sequence, First Strand Chain: C, E, G, H Engineered: Yes Other_details: Chains G And H Are Single Strands Bound By P		Synthetic: Yes
Molecule: Y Rna Sequence, Second Strand Chain: D, F Engineered: Yes		Synthetic: Yes
Molecule: 60-Kda Ss-Aro Ribonucleoprotein Chain: A, B Synonym: Ro Autoantigen; 60 Kda Ro Protein; 60 Kda Ribonucl Ro; Rornp; Engineered: Yes Other_details: Protein A Binds Rna Chain G, B Binds H		Organism_scientific: Xenopus Laevis Organism_common: African Clawed Frog Organism_taxid: 8355 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: Tn5 B1-4 Expression_system_organ: Eggs Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.202 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.300 153.650 80.560 90.00 92.80 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	ACT, IU, MG	enzyme
related structures	by homologous chain: 1YVR
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural insights into RNA quality control: the Ro autoantigen binds misfolded RNAs via its central cavity., Stein AJ, Fuchs G, Fu C, Wolin SL, Reinisch KM, Cell 2005 May 20;121(4):529-39. PMID:15907467

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk] Biological Unit Coordinates (1yvp.pdb1.gz) 98 Kb Biological Unit Coordinates (1yvp.pdb2.gz) 100 Kb LPC: Ligand-Protein Contacts for 1YVP CSU: Contacts of Structural Units for 1YVP Likely Quarternary Molecular Structure file(s) for 1YVP Structure Factors (574 Kb) Retrieve 1YVP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YVP from S2C, [Save to disk] Re-refined 1yvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YVP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YVP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YVP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yvp_B] [1yvp_E] [1yvp] [1yvp_C] [1yvp_D] [1yvp_F] [1yvp_A] [1yvp_G] [1yvp_H] SWISS-PROT database: [P42700] Domain organization of [RO60_XENLA] by SWISSPFAM

Other resources with information on 1YVP

Community annotation for 1YVP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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