1YW8 Hydrolase date Feb 17, 2005
title H-Metap2 Complexed With A751277
authors C.H.Park
compound source
Molecule: Methionine Aminopeptidase 2
Chain: A
Synonym: Metap 2, Peptidase M 2, Initiation Factor 2 Associated 67 Kda Glycoprotein, P67, P67eif2;
Ec: 3.4.11.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Metap2, Mnpep, P67eif2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.527 99.225 101.191 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand A75, MN BindingDB enzyme Hydrolase E.C.3.4.11.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and optimization of anthranilic acid sulfonamides as inhibitors of methionine aminopeptidase-2: a structural basis for the reduction of albumin binding., Sheppard GS, Wang J, Kawai M, Fidanze SD, BaMaung NY, Erickson SA, Barnes DM, Tedrow JS, Kolaczkowski L, Vasudevan A, Park DC, Wang GT, Sanders WJ, Mantei RA, Palazzo F, Tucker-Garcia L, Lou P, Zhang Q, Park CH, Kim KH, Petros A, Olejniczak E, Nettesheim D, Hajduk P, Henkin J, Lesniewski R, Davidsen SK, Bell RL, J Med Chem. 2006 Jun 29;49(13):3832-49. PMID:16789740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1yw8.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1YW8
  • CSU: Contacts of Structural Units for 1YW8
  • Likely Quarternary Molecular Structure file(s) for 1YW8
  • Retrieve 1YW8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YW8 from S2C, [Save to disk]
  • View 1YW8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YW8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YW8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yw8_A] [1yw8]
  • SWISS-PROT database: [P50579]
  • Domain organization of [AMPM2_HUMAN] by SWISSPFAM
  • Other resources with information on 1YW8
  • Community annotation for 1YW8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science