1YWN	Transferase	date	Feb 18, 2005
title	Vegfr2 In Complex With A Novel 4-Amino-Furo[2,3-D]Pyrimidine
authors	Y.Miyazaki, S.Matsunaga, J.Tang, Y.Maeda, M.Nakano, R.J.Philippe, M.Shibahara, W.Liu, H.Sato, L.Wang, R.T.Nolte
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A Fragment: Kinase Domain Synonym: Vegfr-2, Kinase Insert Domain Receptor, Protein-Ty Kinase Receptor Flk-1; Ec: 2.7.1.112 Engineered: Yes Mutation: Yes Other_details: E990v, Deletion Of Residues 940-989		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.205 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.953 95.595 95.803 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.71 Å
ligand	LIF, PTR BindingDB	enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Novel 4-amino-furo[2,3-d]pyrimidines as Tie-2 and VEGFR2 dual inhibitors., Miyazaki Y, Matsunaga S, Tang J, Maeda Y, Nakano M, Philippe RJ, Shibahara M, Liu W, Sato H, Wang L, Nolte RT, Bioorg Med Chem Lett 2005 May 2;15(9):2203-7. PMID:15837294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1ywn.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 1YWN CSU: Contacts of Structural Units for 1YWN Likely Quarternary Molecular Structure file(s) for 1YWN Structure Factors (266 Kb) Retrieve 1YWN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YWN from S2C, [Save to disk] Re-refined 1ywn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YWN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YWN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YWN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ywn] [1ywn_A] SWISS-PROT database: [P35968] Domain organization of [VGFR2_HUMAN] by SWISSPFAM Domain found in 1YWN: [TyrKc ] by SMART

Other resources with information on 1YWN

Community annotation for 1YWN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---