1YYB Apoptosis date Feb 24, 2005
title Solution Structure Of 1-26 Fragment Of Human Programmed Cell Protein
authors D.S.Liu, Y.G.Feng, H.W.Yao, J.F.Wang
compound source
Molecule: Programmed Cell Death Protein 5
Chain: A
Fragment: Residues 2-26
Synonym: Pdcd5, Tfar19 Protein, Tf-1 Cell Apoptosis Related Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3d
methodSolution NMR
Primary referenceThe N-terminal 26-residue fragment of human programmed cell death 5 protein can form a stable alpha-helix having unique electrostatic potential character., Liu D, Yao H, Chen Y, Feng Y, Chen Y, Wang J, Biochem J 2005 Aug 5;. PMID:16083422
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1yyb.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1YYB
  • Original NMR restraints for 1YYB from PDB
  • Retrieve 1YYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YYB from S2C, [Save to disk]
    • View 1YYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YYB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YYB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yyb] [1yyb_A]
  • SWISS-PROT database: [O14737]
  • Domain organization of [PDCD5_HUMAN] by SWISSPFAM
    • Other resources with information on 1YYB
  • Community annotation for 1YYB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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