1YYD Oxidoreductase date Feb 24, 2005
title High Resolution Crystal Structure Of Manganese Peroxidase
authors M.Sundaramoorthy, H.L.Youngs, M.H.Gold, T.L.Poulos
compound source
Molecule: Peroxidase Manganese-Dependent I
Chain: A
Synonym: Mnp-1, Mnp1, Manganese Peroxidase Isozyme 1
Ec: 1.11.1.13
 Organism_scientific: Phanerochaete Chrysosporium
Organism_taxid: 5306
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.967 45.423 52.930 90.00 96.89 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand CA, GOL, HEM, MAN, MN, NAG, SO4 enzyme Oxidoreductase E.C.1.11.1.13 BRENDA
related structures by homologous chain: 1YYG
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity
  • manganese peroxidase activit...


    • Primary referenceHigh-Resolution Crystal Structure of Manganese Peroxidase: Substrate and Inhibitor Complexes(,)., Sundaramoorthy M, Youngs HL, Gold MH, Poulos TL, Biochemistry 2005 May 3;44(17):6463-6470. PMID:15850380
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1yyd.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1YYD
  • CSU: Contacts of Structural Units for 1YYD
  • Likely Quarternary Molecular Structure file(s) for 1YYD
  • Retrieve 1YYD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YYD from S2C, [Save to disk]
    • View 1YYD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YYD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YYD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yyd] [1yyd_A]
  • SWISS-PROT database: [Q02567]
  • Domain organization of [PEM1_PHACH] by SWISSPFAM
    • Other resources with information on 1YYD
  • Community annotation for 1YYD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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