1YYV Structural Genomics, Unknown Function date Feb 25, 2005
title Putative Transcriptional Regulator Ytfh From Salmonella Typh
authors J.Osipiuk, P.Quartey, L.Lezondra, S.Moy, F.Collart, A.Joachimiak, Center For Structural Genomics (Mcsg)
compound source
Molecule: Putative Transcriptional Regulator
Chain: A, B
Engineered: Yes
Organism_scientific: Salmonella Typhimurium
Organism_taxid: 99287
Strain: Lt2
Gene: Ytfh
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 43 21 2
R_factor 0.201 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.285 79.285 105.115 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand CL, MLY, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1yyv.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1YYV
  • CSU: Contacts of Structural Units for 1YYV
  • Likely Quarternary Molecular Structure file(s) for 1YYV
  • Structure Factors (103 Kb)
  • Retrieve 1YYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YYV from S2C, [Save to disk]
  • Re-refined 1yyv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1YYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1YYV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YYV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yyv_A] [1yyv] [1yyv_B]
  • SWISS-PROT database: [Q7CP90]
  • Domain organization of [Q7CP90_SALTY] by SWISSPFAM
  • Other resources with information on 1YYV
  • Community annotation for 1YYV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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