1YZ4	Hydrolase	date	Feb 28, 2005
title	Crystal Structure Of Dusp15
authors	S.J.Kim, S.E.Ryu, D.G.Jeong, T.S.Yoon, J.H.Kim, Y.H.Cho, S.K.Jeong J.H.Son
compound		source
Molecule: Dual Specificity Phosphatase-Like 15 Isoform A Chain: A, B Fragment: Catalytic Domain Synonym: Dusp15 Ec: 3.1.3.48 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.233 76.395 101.429 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	BOG, SO4	enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of the catalytic domain of human VHY, a dual-specificity protein phosphatase., Yoon TS, Jeong DG, Kim JH, Cho YH, Son JH, Lee JW, Ryu SE, Kim SJ, Proteins 2005 Sep 16;. PMID:16170801

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (1yz4.pdb1.gz) 27 Kb Biological Unit Coordinates (1yz4.pdb2.gz) 26 Kb LPC: Ligand-Protein Contacts for 1YZ4 CSU: Contacts of Structural Units for 1YZ4 Likely Quarternary Molecular Structure file(s) for 1YZ4 Structure Factors (117 Kb) Retrieve 1YZ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YZ4 from S2C, [Save to disk] Re-refined 1yz4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YZ4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YZ4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YZ4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yz4] [1yz4_B] [1yz4_A] SWISS-PROT database: [Q9H1R2] Domain organization of [DUS15_HUMAN] by SWISSPFAM Domain found in 1YZ4: [DSPc ] by SMART

Other resources with information on 1YZ4

Community annotation for 1YZ4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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