1Z0M	Sugar Binding Protein	date	Mar 02, 2005
title	The Glycogen-Binding Domain Of The Amp-Activated Protein Kin Subunit
authors	G.Polekhina, A.Gupta, B.J.Van Denderen, S.C.Feil, B.E.Kemp, D.Sta M.W.Parker
compound		source
Molecule: 5'-Amp-Activated Protein Kinase, Beta-1 Subunit Chain: A, B, C Fragment: 68-163 Of Beta1 Subunit Synonym: Ampk Beta-1 Chain, Ampkb, 40 Kda Subunit Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproex Ht
symmetry	Space Group: P 1	R_factor 0.191 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.735 44.891 50.335 70.72 68.77 65.79
method	X-Ray Diffraction	resolution	1.91 Å
ligand	GLC	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structural Basis for Glycogen Recognition by AMP-Activated Protein Kinase., Polekhina G, Gupta A, van Denderen BJ, Feil SC, Kemp BE, Stapleton D, Parker MW, Structure (Camb) 2005 Oct;13(10):1453-1462. PMID:16216577

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1z0m.pdb1.gz) 18 Kb Biological Unit Coordinates (1z0m.pdb2.gz) 17 Kb Biological Unit Coordinates (1z0m.pdb3.gz) 17 Kb LPC: Ligand-Protein Contacts for 1Z0M CSU: Contacts of Structural Units for 1Z0M Likely Quarternary Molecular Structure file(s) for 1Z0M Structure Factors (164 Kb) Retrieve 1Z0M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z0M from S2C, [Save to disk] Re-refined 1z0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z0M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Z0M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z0M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z0m_A] [1z0m] [1z0m_C] [1z0m_B] SWISS-PROT database: [P80386] Domain organization of [AAKB1_RAT] by SWISSPFAM

Other resources with information on 1Z0M

Community annotation for 1Z0M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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