1Z2C Signaling Protein date Mar 08, 2005
title Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-Gmpp
authors R.Rose, M.Weyand, M.Lammers, T.Ishizaki, M.R.Ahmadian, A.Wittingh
compound source
Molecule: Rho-Related Gtp-Binding Protein Rhoc
Chain: A, C
Synonym: H9, Rhoc
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhoc, Arh9, Arhc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1

Molecule: Diaphanous Protein Homolog 1
Chain: B, D
Synonym: Diaphanous-Related Formin 1, Drf1, Mdia1, P140mdia
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Diaph1, Diap1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-1
symmetry Space Group: P 21 21 2
R_factor 0.211 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.640 85.350 123.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand GNP, MG enzyme
related structures by homologous chain: 1LB1, 2BNX
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural and mechanistic insights into the interaction between Rho and mammalian Dia., Rose R, Weyand M, Lammers M, Ishizaki T, Ahmadian MR, Wittinghofer A, Nature 2005 May 1;. PMID:15864301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (354 Kb) [Save to disk]
  • Biological Unit Coordinates (1z2c.pdb1.gz) 349 Kb
  • Biological Unit Coordinates (1z2c.pdb2.gz) 343 Kb
  • LPC: Ligand-Protein Contacts for 1Z2C
  • CSU: Contacts of Structural Units for 1Z2C
  • Likely Quarternary Molecular Structure file(s) for 1Z2C
  • Structure Factors (259 Kb)
  • Retrieve 1Z2C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z2C from S2C, [Save to disk]
  • Re-refined 1z2c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z2C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z2C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z2C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z2c_D] [1z2c_B] [1z2c] [1z2c_A] [1z2c_C]
  • SWISS-PROT database: [O08808] [P08134]
  • Domain organization of [DIAP1_MOUSE] [RHOC_HUMAN] by SWISSPFAM
  • Domains found in 1Z2C: [Drf_FH3] [Drf_GBD] [RHO ] by SMART
  • Other resources with information on 1Z2C
  • Community annotation for 1Z2C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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