1Z2Q Membrane Protein date Mar 08, 2005
title High-Resolution Solution Structure Of The Lm5-1 Fyve Domain Leishmania Major
authors H.D.T.Mertens, J.M.Callaghan, M.J.Mcconville, P.R.Gooley
compound source
Molecule: Lm5-1
Chain: A
Fragment: Fyve Domain
Engineered: Yes
 Organism_scientific: Leishmania Major
Organism_taxid: 5664
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-3
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA high-resolution solution structure of a trypanosomatid FYVE domain., Mertens HD, Callaghan JM, Swarbrick JD, McConville MJ, Gooley PR, Protein Sci. 2007 Nov;16(11):2552-9. Epub 2007 Sep 28. PMID:17905827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (424 Kb) [Save to disk]
  • Biological Unit Coordinates (1z2q.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1Z2Q
  • Original NMR restraints for 1Z2Q from PDB
  • Retrieve 1Z2Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z2Q from S2C, [Save to disk]
    • View 1Z2Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Z2Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z2Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z2q] [1z2q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 1Z2Q: [FYVE ] by SMART
    • Other resources with information on 1Z2Q
  • Community annotation for 1Z2Q at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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