1Z39 Transferase date Mar 10, 2005
title Crystal Structure Of Trichomonas Vaginalis Purine Nucleoside Phosphorylase Complexed With 2'-Deoxyinosine
authors Y.Zhang, W.H.Wang, S.W.Wu, C.C.Wang, S.E.Ealick
compound source
Molecule: Purine Nucleoside Phosphorylase
Chain: A
Ec: 2.4.2.1
Engineered: Yes
Organism_scientific: Trichomonas Vaginalis
Organism_taxid: 5722
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 3 2
R_factor 0.205 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.800 136.800 136.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 2ND enzyme Transferase E.C.2.4.2.1 BRENDA
related structures by homologous chain: 1Z35, 1Z36
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of a subversive substrate of Trichomonas vaginalis purine nucleoside phosphorylase and the crystal structure of the enzyme-substrate complex., Zhang Y, Wang WH, Wu SW, Ealick SE, Wang CC, J Biol Chem 2005 Apr 7;. PMID:15817485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1z39.pdb1.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 1Z39
  • CSU: Contacts of Structural Units for 1Z39
  • Likely Quarternary Molecular Structure file(s) for 1Z39
  • Structure Factors (114 Kb)
  • Retrieve 1Z39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z39 from S2C, [Save to disk]
  • Re-refined 1z39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z39
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z39, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z39] [1z39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1Z39
  • Community annotation for 1Z39 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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