1Z3K Structural Genomics, Unknown Function date Mar 14, 2005
title Structural Insight Into The Binding Diversity Between The Ty Phosphorylated Human Ephrinbs And Nck2 Sh2 Domain
authors X.Ran, J.Song
compound source
Molecule: Cytoplasmic Protein Nck2
Chain: A
Fragment: Sh2 Domain
Synonym: Nck Adaptor Protein 2, Sh2sh3 Adaptor Protein Nck Nck-2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceStructural insight into the binding diversity between the Tyr-phosphorylated human ephrinBs and Nck2 SH2 domain., Ran X, Song J, J Biol Chem 2005 May 13;280(19):19205-12. Epub 2005 Mar 11. PMID:15764601
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]
  • Biological Unit Coordinates (1z3k.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1Z3K
  • Original NMR restraints for 1Z3K from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1Z3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z3K from S2C, [Save to disk]
    • View 1Z3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1Z3K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z3K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z3k] [1z3k_A]
  • SWISS-PROT database: [O43639]
  • Domain organization of [NCK2_HUMAN] by SWISSPFAM
  • Domain found in 1Z3K: [SH2 ] by SMART
    • Other resources with information on 1Z3K
  • Community annotation for 1Z3K at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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