1Z56	Ligase	date	Mar 17, 2005
title	Co-Crystal Structure Of Lif1p-Lig4p
authors	A.S.Dore, N.Furnham, O.R.Davies, B.L.Sibanda, D.Y.Chirgadze, S.P. L.Pellegrini, T.L.Blundell
compound		source
Molecule: Ligase Interacting Factor 1 Chain: A, B Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a+
Molecule: Dna Ligase Iv Chain: C Synonym: Polydeoxyribonucleotide Synthase [Atp], Dna Ligase Homolog; Ec: 6.5.1.1 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Dnl4, Lig4 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgat3
Molecule: Ligase Interacting Factor 1 Chain: D Fragment: Uncharacterized Fragment Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ligase Interacting Factor 1 Chain: E, H Fragment: Uncharacterized Fragment Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ligase Interacting Factor 1 Chain: F Fragment: Uncharacterized Fragment Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ligase Interacting Factor 1 Chain: G Fragment: Uncharacterized Fragment Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ligase Interacting Factor 1 Chain: I Fragment: Uncharacterized Fragment Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ligase Interacting Factor 1 Chain: J Fragment: Uncharacterized Fragment Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Ligase Interacting Factor 1 Chain: K Fragment: Uncharacterized Fragment Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Lif1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 64 2 2	R_factor 0.400 R_Free 0.467
crystal cell	length a length b length c angle alpha angle beta angle gamma 247.617 247.617 98.416 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.92 Å
ligand		enzyme	Ligase E.C.6.5.1.1 BRENDA
Gene Ontology	Chain Function Process Component C
Primary reference	Structure of an Xrcc4-DNA ligase IV yeast ortholog complex reveals a novel BRCT interaction mode., Dore AS, Furnham N, Davies OR, Sibanda BL, Chirgadze DY, Jackson SP, Pellegrini L, Blundell TL, DNA Repair (Amst). 2005 Dec 30;. PMID:16388993

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (1z56.pdb1.gz) 82 Kb CSU: Contacts of Structural Units for 1Z56 Likely Quarternary Molecular Structure file(s) for 1Z56 Structure Factors (136 Kb) Retrieve 1Z56 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z56 from S2C, [Save to disk] Re-refined 1z56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z56 in 3D

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Visual 3D analysis of 1Z56

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z56, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z56] [1z56_J] [1z56_D] [1z56_K] [1z56_G] [1z56_A] [1z56_H] [1z56_E] [1z56_F] [1z56_B] [1z56_C] [1z56_I] SWISS-PROT database: [Q08387] [P53150] Domain organization of [DNLI4_YEAST] [LIF1_YEAST] by SWISSPFAM Domain found in 1Z56: [BRCT ] by SMART

Other resources with information on 1Z56

Community annotation for 1Z56 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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