1Z57 Transferase date Mar 17, 2005
title Crystal Structure Of Human Clk1 In Complex With 10z-Hymenial
authors J.Debreczeni, S.Das, S.Knapp, A.Bullock, K.Guo, A.Amos, O.Fedorov, A.Edwards, M.Sundstrom, F.Von Delft, F.H.Niesen, L.Ball, F.Sobot C.Arrowsmith, Structural Genomics Consortium (Sgc)
compound source
Molecule: Dual Specificity Protein Kinase Clk1
Chain: A
Fragment: Residues 148-484
Synonym: Cdc Like Kinase 1
Ec: 2.7.12.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Clk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plic-Sgc
Expression_system_plasmid: Hclk1-Plic
symmetry Space Group: C 1 2 1
R_factor 0.138 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.277 64.434 80.112 90.00 119.19 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand DBQ enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceKinase domain insertions define distinct roles of CLK kinases in SR protein phosphorylation., Bullock AN, Das S, Debreczeni JE, Rellos P, Fedorov O, Niesen FH, Guo K, Papagrigoriou E, Amos AL, Cho S, Turk BE, Ghosh G, Knapp S, Structure. 2009 Mar 11;17(3):352-62. PMID:19278650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (1z57.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 1Z57
  • CSU: Contacts of Structural Units for 1Z57
  • Likely Quarternary Molecular Structure file(s) for 1Z57
  • Structure Factors (659 Kb)
  • Retrieve 1Z57 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z57 from S2C, [Save to disk]
  • Re-refined 1z57 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z57 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z57
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z57, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z57_A] [1z57]
  • SWISS-PROT database: [P49759]
  • Domain organization of [CLK1_HUMAN] by SWISSPFAM
  • Domain found in 1Z57: [S_TKc ] by SMART
  • Other resources with information on 1Z57
  • Community annotation for 1Z57 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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