1Z5M	Transferase	date	Mar 18, 2005
title	Crystal Structure Of N1-[3-[[5-Bromo-2-[[3-[(1-Pyrrolidinylc Amino]Phenyl]Amino]-4-Pyrimidinyl]Amino]Propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1
authors	M.Whitlow, M.Adler
compound		source
Molecule: 3-Phosphoinositide Dependent Protein Kinase-1 Chain: A Fragment: Kinase Domain Synonym: Hpdk1 Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdpk1, Pdk1 Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_strain: Sf-21 Cells Expression_system_vector_type: Pbluebac4.5 Expression_system_plasmid: Pdk1-Cat-Pbb4.5
symmetry	Space Group: P 32 2 1	R_factor 0.212 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.610 124.610 46.970 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.17 Å
ligand	CL, GOL, LI8, SEP, SO4 BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1H1W, 1OKY
Gene Ontology	Chain Function Process Component A
Primary reference	Novel small molecule inhibitors of 3-phosphoinositide-dependent kinase-1 (PDK1)., Feldman RI, Wu JM, Polokoff MA, Kochanny MJ, Dinter H, Zhu D, Biroc SL, Alicke B, Bryant J, Yuan S, Buckman BO, Lentz D, Ferrer M, Whitlow M, Adler M, Finster S, Chang Z, Arnaiz D, J Biol Chem 2005 Mar 16;. PMID:15772071

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (1z5m.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 1Z5M CSU: Contacts of Structural Units for 1Z5M Likely Quarternary Molecular Structure file(s) for 1Z5M Structure Factors (147 Kb) Retrieve 1Z5M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z5M from S2C, [Save to disk] Re-refined 1z5m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z5M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Z5M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z5M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z5m] [1z5m_A] SWISS-PROT database: [O15530] Domain organization of [PDPK1_HUMAN] by SWISSPFAM Domain found in 1Z5M: [S_TKc ] by SMART

Other resources with information on 1Z5M

Community annotation for 1Z5M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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