1Z6F	Hydrolase	date	Mar 22, 2005
title	Crystal Structure Of Penicillin-Binding Protein 5 From E. Co Complex With A Boronic Acid Inhibitor
authors	G.Nicola, S.Peddi, M.Stefanova, R.A.Nicholas, W.G.Gutheil, C.Davi
compound		source
Molecule: Penicillin-Binding Protein 5 Chain: A Synonym: D-Alanyl-D-Alanine Carboxypeptidase Fraction A, Dd Peptidase, Dd-Carboxypeptidase, Pbp-5; Ec: 3.4.16.4 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Daca, Pfv Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Mc1061 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbr322
symmetry	Space Group: C 1 2 1	R_factor 0.213 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.760 50.250 84.310 90.00 120.20 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	BO9, GOL	enzyme	Hydrolase E.C.3.4.16.4 BRENDA
related structures	by homologous chain: 1NZO
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structure of Escherichia coli Penicillin-Binding Protein 5 Bound to a Tripeptide Boronic Acid Inhibitor: A Role for Ser-110 in Deacylation., Nicola G, Peddi S, Stefanova M, Nicholas RA, Gutheil WG, Davies C, Biochemistry 2005 Jun 14;44(23):8207-8217. PMID:15938610

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1z6f.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 1Z6F CSU: Contacts of Structural Units for 1Z6F Likely Quarternary Molecular Structure file(s) for 1Z6F Structure Factors (443 Kb) Retrieve 1Z6F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z6F from S2C, [Save to disk] Re-refined 1z6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z6F in 3D

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Visual 3D analysis of 1Z6F

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z6F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z6f] [1z6f_A] SWISS-PROT database: [P0AEB2] Domain organization of [DACA_ECOLI] by SWISSPFAM Domain found in 1Z6F: [PBP5_C ] by SMART

Other resources with information on 1Z6F

Community annotation for 1Z6F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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