1Z6J	Hydrolase	date	Mar 22, 2005
title	Crystal Structure Of A Ternary Complex Of Factor Viiatissue Factorpyrazinone Inhibitor
authors	B.A.Schweitzer, W.L.Neumann, H.K.Rahman, C.L.Kusturin, K.R.Sampl G.I.Poda, R.G.Kurumbail, A.M.Stevens, R.A.Stegeman, W.C.Stallin
compound		source
Molecule: Coagulation Factor Vii Chain: L Fragment: Light Chain Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Cricetinae Expression_system_common: Hamsters Expression_system_taxid: 10026 Expression_system_organ: Kidney
Molecule: Coagulation Factor Vii Chain: H Fragment: Heavy Chain Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Cricetinae Expression_system_common: Hamsters Expression_system_taxid: 10026 Expression_system_organ: Kidney
Molecule: Tissue Factor Chain: T Fragment: Residues 33-243 Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.209 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.652 81.137 125.577 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CA, CGU, MG, PY3 BindingDB	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
related structures	by homologous chain: 1DAN, 1JBU, 1O5D
Gene Ontology	Chain Function Process Component H L T
Primary reference	Structure-based design and synthesis of pyrazinones containing novel P1 'side pocket' moieties as inhibitors of TF/VIIa., Schweitzer BA, Neumann WL, Rahman HK, Kusturin CL, Sample KR, Poda GI, Kurumbail RG, Stevens AM, Stegeman RA, Stallings WC, South MS, Bioorg Med Chem Lett 2005 Jun 15;15(12):3006-11. PMID:15913999

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (1z6j.pdb1.gz) 107 Kb LPC: Ligand-Protein Contacts for 1Z6J CSU: Contacts of Structural Units for 1Z6J Likely Quarternary Molecular Structure file(s) for 1Z6J Structure Factors (335 Kb) Retrieve 1Z6J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z6J from S2C, [Save to disk] Re-refined 1z6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z6J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z6j_T] [1z6j_H] [1z6j] [1z6j_L] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 1Z6J: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 1Z6J

Community annotation for 1Z6J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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