1Z6Q Transferase date Mar 23, 2005
title Glycogen Phosphorylase With Inhibitor In The Amp Site
authors M.Kristiansen, B.Andersen, L.F.Iversen, N.Westergaard
compound source
Molecule: Glycogen Phosphorylase, Muscle Form
Chain: A
Fragment: Glycogen Phosphorylase
Synonym: Myophosphorylase
Ec: 2.4.1.1
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Muscle
Other_details: Gene Pygm
symmetry Space Group: P 43 21 2
R_factor 0.210 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.500 127.500 115.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.03 Å
ligand 195, LLP enzyme Transferase E.C.2.4.1.1 BRENDA
related structures by homologous chain: 1LWO, 1P4H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification, synthesis, and characterization of new glycogen phosphorylase inhibitors binding to the allosteric AMP site., Kristiansen M, Andersen B, Iversen LF, Westergaard N, J Med Chem 2004 Jul 1;47(14):3537-45. PMID:15214781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1z6q.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 1Z6Q
  • CSU: Contacts of Structural Units for 1Z6Q
  • Likely Quarternary Molecular Structure file(s) for 1Z6Q
  • Retrieve 1Z6Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z6Q from S2C, [Save to disk]
  • View 1Z6Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z6Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z6Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z6q] [1z6q_A]
  • SWISS-PROT database: [P00489]
  • Domain organization of [PYGM_RABIT] by SWISSPFAM
  • Other resources with information on 1Z6Q
  • Community annotation for 1Z6Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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