1Z6S Hydrolase date Mar 23, 2005
title Ribonuclease A- Amp Complex
authors G.N.Hatzopoulos, D.D.Leonidas, R.Kardakaris, J.Kobe, N.G.Oikonom
compound source
Molecule: Ribonuclease Pancreatic
Chain: A, B
Synonym: Ribonuclease A, Rnase A, Rnase 1
Ec: 3.1.27.5
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.330 32.609 72.419 90.00 90.83 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand AMP enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


  • Primary referenceThe binding of IMP to Ribonuclease A., Hatzopoulos GN, Leonidas DD, Kardakaris R, Kobe J, Oikonomakos NG, FEBS J 2005 Aug;272(15):3988-4001. PMID:16045769
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1z6s.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1z6s.pdb2.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1Z6S
  • CSU: Contacts of Structural Units for 1Z6S
  • Likely Quarternary Molecular Structure file(s) for 1Z6S
  • Structure Factors (262 Kb)
  • Retrieve 1Z6S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Z6S from S2C, [Save to disk]
  • Re-refined 1z6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Z6S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Z6S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Z6S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1z6s] [1z6s_A] [1z6s_B]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 1Z6S: [RNAse_Pc ] by SMART
  • Other resources with information on 1Z6S
  • Community annotation for 1Z6S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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