1Z9P	Oxidoreductase	date	Apr 04, 2005
title	X-Ray Structure Of A Cu-Zn Superoxide Dismutase From Haemoph Ducreyi
authors	K.Djinovic Carugo, I.Toeroe
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B Fragment: Residues 45-199 Ec: 1.15.1.1 Engineered: Yes Other_details: Mature Protein Without Bound Haem		Organism_scientific: Haemophilus Ducreyi Organism_taxid: 730 Gene: Sodc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: 7118 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phen-1
symmetry	Space Group: C 1 2 1	R_factor 0.170 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.410 63.990 73.970 90.00 118.04 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CU, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of heme binding in the Cu,Zn superoxide dismutase from Haemophilus ducreyi., Toro I, Petrutz C, Pacello F, D'Orazio M, Battistoni A, Djinovic-Carugo K, J Mol Biol. 2009 Feb 20;386(2):406-18. Epub 2008 Dec 11. PMID:19103206

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1z9p.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 1Z9P CSU: Contacts of Structural Units for 1Z9P Likely Quarternary Molecular Structure file(s) for 1Z9P Structure Factors (679 Kb) Retrieve 1Z9P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Z9P from S2C, [Save to disk] Re-refined 1z9p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Z9P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Z9P

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1Z9P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1z9p_B] [1z9p] [1z9p_A] SWISS-PROT database: [Q59452] Domain organization of [SODC_HAEDU] by SWISSPFAM

Other resources with information on 1Z9P

Community annotation for 1Z9P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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