1ZA8 Antiviral Protein date Apr 05, 2005
title Nmr Solution Structure Of A Leaf-Specific-Expressed Cyclotid
authors B.Chen, M.L.Colgrave, N.L.Daly, K.J.Rosengren, K.R.Gustafson, D.J
compound source
Molecule: Vhl-1
Chain: A
Organism_scientific: Viola Hederacea
Organism_taxid: 180952
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIsolation and Characterization of Novel Cyclotides from Viola hederaceae: SOLUTION STRUCTURE AND ANTI-HIV ACTIVITY OF vhl-1, A LEAF-SPECIFIC EXPRESSED CYCLOTIDE., Chen B, Colgrave ML, Daly NL, Rosengren KJ, Gustafson KR, Craik DJ, J Biol Chem 2005 Jun 10;280(23):22395-405. Epub 2005 Apr 11. PMID:15824119
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (1za8.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 1ZA8
  • Original NMR restraints for 1ZA8 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1ZA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZA8 from S2C, [Save to disk]
  • View 1ZA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZA8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZA8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1za8_A] [1za8]
  • SWISS-PROT database: [P84522]
  • Domain organization of [VHL1_VIOHE] by SWISSPFAM
  • Other resources with information on 1ZA8
  • Community annotation for 1ZA8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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