1ZCJ Oxidoreductase date Apr 12, 2005
title Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
authors J.P.Taskinen, T.R.Kiema, J.K.Hiltunen, R.K.Wierenga
compound source
Molecule: Peroxisomal Bifunctional Enzyme
Chain: A
Fragment: 3-Hydroxyacyl-Coa Dehydrogenase
Synonym: Pbe, Pbfe, Mfe1 (3s)-Hydroxyacyl-Coa Dehydrogenase
Ec: 1.1.1.35
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 41 21 2
R_factor 0.170 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.910 122.910 58.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.35 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Studies of MFE-1: the 1.9A Crystal Structure of the Dehydrogenase Part of Rat Peroxisomal MFE-1., Taskinen JP, Kiema TR, Hiltunen JK, Wierenga RK, J Mol Biol. 2006 Jan 27;355(4):734-46. Epub 2005 Nov 18. PMID:16330050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1zcj.pdb1.gz) 83 Kb
  • CSU: Contacts of Structural Units for 1ZCJ
  • Likely Quarternary Molecular Structure file(s) for 1ZCJ
  • Structure Factors (321 Kb)
  • Retrieve 1ZCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZCJ from S2C, [Save to disk]
  • Re-refined 1zcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZCJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZCJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zcj_A] [1zcj]
  • SWISS-PROT database: [P07896]
  • Domain organization of [ECHP_RAT] by SWISSPFAM
  • Other resources with information on 1ZCJ
  • Community annotation for 1ZCJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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