3L4P Oxidoreductase date Dec 21, 2009
title Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A. Aor Desulfovibrio Gigas Covalently Bound To [Aso3]-
authors D.R.Boer, M.J.Romao
compound source
Molecule: Aldehyde Oxidoreductase
Chain: A
Synonym: Molybdenum Iron Sulfur Protein
Ec: 1.2.99.7
 Organism_scientific: Desulfovibrio Gigas
Organism_taxid: 879
symmetry Space Group: P 61 2 2
R_factor 0.142 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.890 142.890 161.640 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.45 Å
ligand AST, CA, CL, FES, IPA, LI, MG, PCD, URE enzyme Oxidoreductase E.C.1.2.99.7 BRENDA
note 3L4P supersedes 1ZCS
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceCorrelating EPR and X-ray structural analysis of arsenite-inhibited forms of aldehyde oxidoreductase., Thapper A, Boer DR, Brondino CD, Moura JJ, Romao MJ, J Biol Inorg Chem. 2007 Mar;12(3):353-66. Epub 2006 Dec 1. PMID:17139522
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (3l4p.pdb1.gz) 309 Kb
  • Biological Unit Coordinates (3l4p.pdb2.gz) 614 Kb
  • LPC: Ligand-Protein Contacts for 3L4P
  • CSU: Contacts of Structural Units for 3L4P
  • Structure Factors (1335 Kb)
  • Retrieve 3L4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L4P from S2C, [Save to disk]
  • Re-refined 3l4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L4P in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L4P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L4P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l4p] [3l4p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L4P: [Ald_Xan_dh_C ] by SMART
    • Other resources with information on 3L4P
  • Community annotation for 3L4P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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