1ZDA Igg Binding Domain date Jul 09, 1997
title Phage-Selected Mini Protein A Domain, Z38, Nmr, 24 Structure
authors M.A.Starovasnik
compound source
Molecule: Mini Protein A Domain, Z38
Chain: A
Engineered: Yes
Other_details: Minimized, Two-Helix, Igg-Binding Variant Of
 Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
related structures by homologous chain: 1SS1, 1ZDB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural mimicry of a native protein by a minimized binding domain., Starovasnik MA, Braisted AC, Wells JA, Proc Natl Acad Sci U S A 1997 Sep 16;94(19):10080-5. PMID:9294166
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (1zda.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1ZDA
  • Retrieve 1ZDA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZDA from S2C, [Save to disk]
    • View 1ZDA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZDA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZDA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1zda__, region [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zda] [1zda_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1ZDA
  • Community annotation for 1ZDA at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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