1ZDH MS2 COAT PROTEIN/RNA COMPLEX date
authors Valegard, K., Worm, S.Van.Den., Liljas, L.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
related structures by homologous chain: 1HE0, 1ZDI
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions., Valegard K, Murray JB, Stonehouse NJ, van den Worm S, Stockley PG, Liljas L, J Mol Biol 1997 Aug 1;270(5):724-38. PMID:9245600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (1zdh.pdb1.gz) 4247 Kb
  • CSU: Contacts of Structural Units for 1ZDH
  • Likely Quarternary Molecular Structure file(s) for 1ZDH
  • Structure Factors (2258 Kb)
  • Retrieve 1ZDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZDH from S2C, [Save to disk]
  • View 1ZDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZDH
  • VIPERdb: visual, structural and computational analysis of 1ZDH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZDH, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1zdha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1zdhb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1zdhc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zdh_C] [1zdh_R] [1zdh_A] [1zdh_S] [1zdh_B] [1zdh]
  • SWISS-PROT database: [P03612]
  • Domain organization of [COAT_BPMS2] by SWISSPFAM
  • Other resources with information on 1ZDH
  • Community annotation for 1ZDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1ZDH from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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