1ZEF Hydrolase date Apr 18, 2005
title Structure Of Alkaline Phosphatase From Human Placenta In Com Its Uncompetitive Inhibitor L-Phe
authors P.Llinas, E.A.Stura, A.Menez, Z.Kiss, T.Stigbrand, J.L.Millan, M.H
compound source
Molecule: Alkaline Phosphatase
Chain: A
Synonym: Plap-1, Regan Isozyme
Ec: 3.1.3.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Placenta
symmetry Space Group: C 2 2 21
R_factor 0.126 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.791 114.944 106.341 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, MG, NAG, PHE, SEP, ZN enzyme Hydrolase E.C.3.1.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies of human placental alkaline phosphatase in complex with functional ligands., Llinas P, Stura EA, Menez A, Kiss Z, Stigbrand T, Millan JL, Le Du MH, J Mol Biol 2005 Jul 15;350(3):441-51. PMID:15946677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1zef.pdb1.gz) 172 Kb
  • LPC: Ligand-Protein Contacts for 1ZEF
  • CSU: Contacts of Structural Units for 1ZEF
  • Likely Quarternary Molecular Structure file(s) for 1ZEF
  • Structure Factors (753 Kb)
  • Retrieve 1ZEF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZEF from S2C, [Save to disk]
  • Re-refined 1zef structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZEF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZEF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZEF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zef] [1zef_A]
  • SWISS-PROT database: [P05187]
  • Domain organization of [PPB1_HUMAN] by SWISSPFAM
  • Domain found in 1ZEF: [alkPPc ] by SMART
  • Other resources with information on 1ZEF
  • Community annotation for 1ZEF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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