1ZFD Zinc Finger Dna Binding Domain date Apr 04, 1996
title Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
authors D.Neuhaus, Y.Nakaseko, J.W.R.Schwabe, D.Rhodes, A.Klug
compound source
Molecule: Swi5
Chain: A
Fragment: Zinc Finger Domain 2
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Prk172
Other_details: T7 Promoter
methodSolution NMR
ligand ZN enzyme
Primary referenceSolution structures of two zinc-finger domains from SWI5 obtained using two-dimensional 1H nuclear magnetic resonance spectroscopy. A zinc-finger structure with a third strand of beta-sheet., Neuhaus D, Nakaseko Y, Schwabe JW, Klug A, J Mol Biol 1992 Nov 20;228(2):637-51. PMID:1453468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (392 Kb) [Save to disk]
  • Biological Unit Coordinates (1zfd.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 1ZFD
  • CSU: Contacts of Structural Units for 1ZFD
  • Original NMR restraints for 1ZFD from PDB
  • Retrieve 1ZFD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZFD from S2C, [Save to disk]
    • View 1ZFD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZFD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZFD, from MSDmotif at EBI
  • Genome occurence of 1ZFD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1zfd__, region [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zfd_A] [1zfd]
  • SWISS-PROT database: [P08153]
  • Domain organization of [SWI5_YEAST] by SWISSPFAM
  • Domain found in 1ZFD: [ZnF_C2H2 ] by SMART
    • Other resources with information on 1ZFD
  • Community annotation for 1ZFD at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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