1ZGI Hydrolase Hydrolase Inhibitor date Apr 21, 2005
title Thrombin In Complex With An Oxazolopyridine Inhibitor 21
authors J.Z.Deng, D.R.Mcmasters, P.M.Rabbat, P.D.Williams, C.A.Coburn, Y. L.C.Kuo, S.D.Lewis, B.J.Lucas, J.A.Krueger, B.Strulovici, J.P.Va T.A.Lyle, C.S.Burgey
compound source
Molecule: Thrombin
Chain: A
Fragment: Alpha-Thrombin
Synonym: Coagulation Factor II
Ec: 3.4.21.5
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Hirudin
Chain: B
Fragment: Hirugen
Engineered: Yes

Synthetic: Yes
Organism_scientific: Hirudo Medicinalis
Organism_taxid: 6421
Other_details: This Sequence Corresponds To The C-Terminus Hirudin.
symmetry Space Group: C 1 2 1
R_factor 0.220 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.930 71.980 73.070 90.00 100.85 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 382, TYS enzyme Hydrolase E.C.3.4.21.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of an oxazolopyridine series of dual thrombin/factor Xa inhibitors via structure-guided lead optimization., Deng JZ, McMasters DR, Rabbat PM, Williams PD, Coburn CA, Yan Y, Kuo LC, Lewis SD, Lucas BJ, Krueger JA, Strulovici B, Vacca JP, Lyle TA, Burgey CS, Bioorg Med Chem Lett 2005 Oct 15;15(20):4411-6. PMID:16137886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1zgi.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1ZGI
  • CSU: Contacts of Structural Units for 1ZGI
  • Likely Quarternary Molecular Structure file(s) for 1ZGI
  • Retrieve 1ZGI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZGI from S2C, [Save to disk]
  • View 1ZGI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZGI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZGI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zgi_B] [1zgi] [1zgi_A]
  • SWISS-PROT database: [P28511] [P00734]
  • Domain organization of [HIR3C_HIRME] [THRB_HUMAN] by SWISSPFAM
  • Domain found in 1ZGI: [Tryp_SPc ] by SMART
  • Other resources with information on 1ZGI
  • Community annotation for 1ZGI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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