1ZJO Transferase date Apr 29, 2005
title Crystal Structure Of Human N-Acetylgalactosaminyltransferase Complexed With Galactose-Grease
authors J.A.Letts, N.L.Rose, Y.R.Fang, C.H.Barry, S.N.Borisova, N.O.Seto, M.M.Palcic, S.V.Evans
compound source
Molecule: Histo-Blood Group Abo System Transferase (Nagat) Glycoprotein-Fucosylgalactoside Alpha-N- Acetylgalactosaminyltransferase;
Chain: A
Synonym: Fucosylglycoprotein Alpha-N-Acetylgalactosaminyltr (Histo-Blood Group A Transferase) (A Transferase);
Ec: 2.4.1.40
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abo
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw Delta 1ac (E-H)
symmetry Space Group: C 2 2 21
R_factor 0.206 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.570 149.570 79.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.64 Å
ligand CL, DR4, HG, MN, UDP enzyme Transferase E.C.2.4.1.40 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferential recognition of the type-I and type-II H-antigen acceptors by the human ABO(H) blood group A and B glycosyltransferases., Letts JA, Rose NL, Fang YR, Barry CH, Borisova SN, Seto NO, Palcic MM, Evans SV, J Biol Chem 2005 Dec 2;. PMID:16326711
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1zjo.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (1zjo.pdb2.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 1ZJO
  • CSU: Contacts of Structural Units for 1ZJO
  • Likely Quarternary Molecular Structure file(s) for 1ZJO
  • Structure Factors (301 Kb)
  • Retrieve 1ZJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZJO from S2C, [Save to disk]
  • Re-refined 1zjo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZJO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZJO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zjo_A] [1zjo]
  • SWISS-PROT database: [P16442]
  • Domain organization of [BGAT_HUMAN] by SWISSPFAM
  • Other resources with information on 1ZJO
  • Community annotation for 1ZJO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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