1ZKD Structural Genomics, Unknown Function date May 02, 2005
title X-Ray Structure Of The Putative Protein Q6n1p6 From Rhodopse Palustris At The Resolution 2.1 A , Northeast Structural Ge Consortium Target Rpr58
authors A.P.Kuzin, W.Yong, S.M.Vorobiev, T.Acton, L.Ma, R.Xiao, G.Montelio L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (N
compound source
Molecule: Duf185
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodopseudomonas Palustris
Organism_taxid: 258594
Strain: Cga009
Gene: Rpa4359
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) + Magic
Expression_system_vector_type: Pet21
symmetry Space Group: P 61
R_factor 0.223 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.795 79.795 247.352 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1zkd.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 1ZKD
  • CSU: Contacts of Structural Units for 1ZKD
  • Likely Quarternary Molecular Structure file(s) for 1ZKD
  • Structure Factors (1300 Kb)
  • Retrieve 1ZKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZKD from S2C, [Save to disk]
  • Re-refined 1zkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZKD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZKD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zkd_B] [1zkd_A] [1zkd]
  • SWISS-PROT database: [Q6N1P6]
  • Domain organization of [Q6N1P6_RHOPA] by SWISSPFAM
    • Other resources with information on 1ZKD
  • Community annotation for 1ZKD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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