1ZKZ Hormone Growth Factor date May 04, 2005
title Crystal Structure Of Bmp9
authors M.A.Brown, Q.Zhao, K.A.Baker, C.Naik, C.Chen, L.Pukac, M.Singh, T.T Y.Parice, A.Mahoney, V.Roschke, I.Sanyal, S.Choe
compound source
Molecule: Growthdifferentiation Factor 2
Chain: A
Fragment: Growthdifferentiation Factor 2, Residues 320-429
Synonym: Gdf-2, Bone Morphogenetic Protein 9, Bmp-9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gdf2, Bmp9
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Cho-Dg44
Expression_system_tissue: Ovary Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pc4
symmetry Space Group: I 41 2 2
R_factor 0.231 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.234 71.234 144.897 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.33 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of BMP-9 and functional interactions with pro-region and receptors., Brown MA, Zhao Q, Baker KA, Naik C, Chen C, Pukac L, Singh M, Tsareva T, Parice Y, Mahoney A, Roschke V, Sanyal I, Choe S, J Biol Chem 2005 Apr 25;. PMID:15851468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1zkz.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 1ZKZ
  • Likely Quarternary Molecular Structure file(s) for 1ZKZ
  • Structure Factors (74 Kb)
  • Retrieve 1ZKZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZKZ from S2C, [Save to disk]
  • Re-refined 1zkz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZKZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZKZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZKZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zkz] [1zkz_A]
  • SWISS-PROT database: [Q9UK05]
  • Domain organization of [GDF2_HUMAN] by SWISSPFAM
  • Domain found in 1ZKZ: [TGFB ] by SMART
  • Other resources with information on 1ZKZ
  • Community annotation for 1ZKZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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