1ZME Transcription Dna date Aug 06, 1997
title Crystal Structure Of Put3dna Complex
authors K.Swaminathan, R.Marmorstein
compound source
Molecule: Dna (5'- D(Apcpgpgpgpapapgpcpcpapapcptpcpcpg)-3');
Chain: A
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Lys-S
Expression_system_vector: Pet16b
Expression_system_gene: Put3 (31-100)

Molecule: Dna (5'-D(Apcpgpgpapgp(5iu)Ptpgpgpcpt Pcpcpcpg)-3');
Chain: B
Engineered: Yes


Molecule: Proline Utilization Transcription Activator
Chain: C, D
Fragment: Residues 31 - 100
Synonym: Put3 (Proline Utilization Transcription Activator)
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 6
R_factor 0.208 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.650 121.650 39.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand 5IU, ZN enzyme
note 1ZME is a representative structure
related structures by homologous chain: 1AJY
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceCrystal structure of a PUT3-DNA complex reveals a novel mechanism for DNA recognition by a protein containing a Zn2Cys6 binuclear cluster., Swaminathan K, Flynn P, Reece RJ, Marmorstein R, Nat Struct Biol 1997 Sep;4(9):751-9. PMID:9303004
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1zme.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1ZME
  • CSU: Contacts of Structural Units for 1ZME
  • Likely Quarternary Molecular Structure file(s) for 1ZME
  • Structure Factors (191 Kb)
  • Retrieve 1ZME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZME from S2C, [Save to disk]
  • Re-refined 1zme structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZME
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZME, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1zmec1, region C:31-66 [Jmol] [rasmolscript] [script source]
        - Domain d1zmec2, region C:67-100 [Jmol] [rasmolscript] [script source]
        - Domain d1zmed1, region D:31-66 [Jmol] [rasmolscript] [script source]
        - Domain d1zmed2, region D:67-100 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zme_C] [1zme_B] [1zme_D] [1zme] [1zme_A]
  • SWISS-PROT database: [P25502]
  • Domain organization of [PUT3_YEAST] by SWISSPFAM
  • Domain found in 1ZME: [GAL4 ] by SMART
  • Other resources with information on 1ZME
  • Community annotation for 1ZME at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1ZME from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science