1ZMP Crystal structure of human defensin-5 date
authors Lubkowski, J., Szyk, A., Lu, W.
compound source
symmetry
R_factor
R_Free 0.24027
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.65
ligand CL, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of human {alpha}-defensins HNP4, HD5, and HD6., Szyk A, Wu Z, Tucker K, Yang D, Lu W, Lubkowski J, Protein Sci. 2006 Dec;15(12):2749-60. Epub 2006 Nov 6. PMID:17088326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1zmp.pdb1.gz) 7 Kb
  • Biological Unit Coordinates (1zmp.pdb2.gz) 8 Kb
  • Biological Unit Coordinates (1zmp.pdb3.gz) 8 Kb
  • Biological Unit Coordinates (1zmp.pdb4.gz) 7 Kb
  • Biological Unit Coordinates (1zmp.pdb5.gz) 49 Kb
  • Biological Unit Coordinates (1zmp.pdb6.gz) 52 Kb
  • Biological Unit Coordinates (1zmp.pdb7.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1ZMP
  • CSU: Contacts of Structural Units for 1ZMP
  • Likely Quarternary Molecular Structure file(s) for 1ZMP
  • Structure Factors (192 Kb)
  • Retrieve 1ZMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZMP from S2C, [Save to disk]
  • Re-refined 1zmp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZMP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZMP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zmp_B] [1zmp] [1zmp_A] [1zmp_D] [1zmp_C]
  • SWISS-PROT database: [Q01523]
  • Domain organization of [DEF5_HUMAN] by SWISSPFAM
  • Domain found in 1ZMP: [DEFSN ] by SMART
  • Other resources with information on 1ZMP
  • Community annotation for 1ZMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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