1ZMY Immune System Hydrolase date May 11, 2005
title Cabbcii-10 Vhh Framework With Cdr Loops Of Cablys3 Grafted On It And In Complex With Hen Egg White Lysozyme
authors D.Saerens, M.Pellis, R.Loris, E.Pardon, M.Dumoulin, A.Matagne, L.Wyns, S.Muyldermans, K.Conrath
compound source
Molecule: Antibody Cabbcii-10:Lys3
Chain: A
Fragment: N-Terminus, 142 Residues
Synonym: Immunoglobulin Heavy Chain Vhdj Region
Engineered: Yes
Organism_scientific: Camelus Dromedarius
Organism_common: Arabian Camel
Organism_taxid: 9838
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Wk6
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phen6

Molecule: Lysozyme C
Chain: L, M
Synonym: 1,4-Beta-N-Acetylmuramidase C; Allergen Gal D 4 Gal D Iv;
Ec: 3.2.1.17

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 65
R_factor 0.206 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.331 132.331 63.397 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
M, L


Primary referenceIdentification of a universal VHH framework to graft non-canonical antigen-binding loops of camel single-domain antibodies., Saerens D, Pellis M, Loris R, Pardon E, Dumoulin M, Matagne A, Wyns L, Muyldermans S, Conrath K, J Mol Biol 2005 Sep 23;352(3):597-607. PMID:16095608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1zmy.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (1zmy.pdb2.gz) 22 Kb
  • CSU: Contacts of Structural Units for 1ZMY
  • Likely Quarternary Molecular Structure file(s) for 1ZMY
  • Structure Factors (217 Kb)
  • Retrieve 1ZMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZMY from S2C, [Save to disk]
  • Re-refined 1zmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZMY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZMY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zmy_M] [1zmy_L] [1zmy_A] [1zmy]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domains found in 1ZMY: [IGv] [LYZ1 ] by SMART
  • Other resources with information on 1ZMY
  • Community annotation for 1ZMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science