1ZNZ Transferase date May 12, 2005
title Crystal Structure Of The Reduced Form Of Mycobacterium Tuber Guanylate Kinase In Complex With Gdp
authors G.Hible, P.Christova, L.Renault, E.Seclaman, A.Thompson, E.Girard H.Munier-Lehmann, J.Cherfils
compound source
Molecule: Guanylate Kinase
Chain: A
Synonym: Gmp Kinase
Ec: 2.7.4.8
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Gmk (Rv1389)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: I 2 3
R_factor 0.180 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.000 112.000 112.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GDP enzyme Transferase E.C.2.7.4.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • adenylate kinase activity
  • guanylate kinase activity


  • Primary referenceUnique GMP-binding site in Mycobacterium tuberculosis guanosine monophosphate kinase., Hible G, Christova P, Renault L, Seclaman E, Thompson A, Girard E, Munier-Lehmann H, Cherfils J, Proteins 2005 Nov 15;. PMID:16288457
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1znz.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1ZNZ
  • CSU: Contacts of Structural Units for 1ZNZ
  • Likely Quarternary Molecular Structure file(s) for 1ZNZ
  • Structure Factors (77 Kb)
  • Retrieve 1ZNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZNZ from S2C, [Save to disk]
  • Re-refined 1znz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ZNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ZNZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZNZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1znz] [1znz_A]
  • SWISS-PROT database: [P0A5I4]
  • Domain organization of [KGUA_MYCTU] by SWISSPFAM
  • Domain found in 1ZNZ: [GuKc ] by SMART
  • Other resources with information on 1ZNZ
  • Community annotation for 1ZNZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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